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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
51
ATAC-seq
48
snATAC-seq
47
WGBS
3
Hi-C
2
Capture-C
Assay category
177
Transcription
99
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
7
August, 2020
4
August, 2021
3
October, 2022
Available data
169
fastq
153
zippedFastqFolder
15
bigWig
6
tsv
4
bed narrowPeak
bed bedgraph
3
bedpe bed3+
3
cool
3
hic
3
txt
2
bed bed3+
Organism
328
Homo sapiens
Biosample type
324
primary cell
4
in vitro differentiated cells
Organ
152
epithelium
152
pancreas
4
connective tissue
Project
324
HPAP
4
AMP
Genome assembly (visualization)
10
GRCh38
7
hg19
Lab
2866
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
files.file_type!
bed bedgraph
bigBed narrowPeak
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
BIOSAMPLE
ASSAY
328 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
Hi-C
Capture-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
pancreatic acinar cell
4
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
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