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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
8
snATAC-seq
1
ATAC-seq
Assay category
42
DNA binding
9
DNA accessibility
Target of assay
37
transcription factor
4
RNA binding protein
4
chromatin remodeller
3
control
Date released
27
December, 2018
January, 2019
15
November, 2018
8
January, 2021
1
January, 2018
Available data
42
bam
42
fastq
40
bigWig
39
bed narrowPeak
39
bigBed narrowPeak
Organism
51
Homo sapiens
Biosample type
43
cell line
8
primary cell
Organ
926
pancreas
700
liver
658
connective tissue
517
epithelium
483
adipose tissue
387
heart
354
kidney
230
vasculature
224
blood vessel
168
brain
159
bone element
135
artery
122
limb
81
musculature of body
61
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
43
AMP
8
T1D
Genome assembly (visualization)
40
hg19
39
GRCh38
Lab
43
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
files.file_type!
bed bedgraph
tagAlign
lab.title!
Stephen Parker, UMich
month_released!
January, 2019
BIOSAMPLE
ASSAY
51 results
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ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878
42
1
primary cell
peripheral blood mononuclear cell
8
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