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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ATAC-seq
39
ChIP-seq
14
total RNA-seq
8
DNase-seq
4
pCHi-C
1
RRBS
Assay category
81
DNA accessibility
39
DNA binding
14
Transcription
1
DNA methylation
Target of assay
23
histone
23
histone modification
14
broad histone mark
10
control
9
narrow histone mark
6
transcription factor
2
RNA binding protein
Date released
62
February, 2023
47
October, 2019
14
February, 2021
9
June, 2019
5
May, 2019
2
July, 2019
Available data
109
bam
107
bed narrowPeak
91
bigWig
tsv
31
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
139
Homo sapiens
Biosample type
120
tissue
14
cell line
5
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
225
heart
202
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
0
adrenal gland
Project
139
AMP
Genome assembly (visualization)
80
GRCh38
73
hg19
Lab
139
AMP-T2D consortium
files.file_type!
bed bedgraph
tsv
BIOSAMPLE
ASSAY
139 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
RRBS
tissue
coronary artery
36
5
2
tibial artery
1
23
2
islet of Langerhans
1
2
14
4
retina
15
3
pigmented layer of retina
12
cell line
smooth muscle cell of the coronary artery
8
6
primary cell
retinal pigment epithelial cell
3
1
1
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