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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
DNase-seq
7
Hi-C
4
small RNA-seq
4
total RNA-seq
3
single cell RNA-seq
2
RRBS
1
ATAC-seq
1
FAIRE-seq
1
WGBS
Assay category
64
DNA accessibility
11
Transcription
7
3D chromatin structure
3
DNA methylation
Target of assay
3
control
Date released
155
October, 2019
91
November, 2017
62
June, 2019
35
May, 2019
23
July, 2019
16
October, 2017
15
February, 2020
6
February, 2021
2
March, 2020
2
November, 2018
1
February, 2023
Available data
79
bigWig
76
bam
65
bed bed3+
63
bed narrowPeak
63
bigBed narrowPeak
62
bed broadPeak
62
bigBed broadPeak
11
tsv
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
Organism
85
Homo sapiens
Biosample type
73
tissue
12
primary cell
Organ
92
kidney
60
heart
53
musculature of body
48
brain
37
limb
36
connective tissue
33
epithelium
19
vasculature
18
ureter
16
blood vessel
13
adipose tissue
12
liver
10
pancreas
8
eye
5
artery
2
pericardium
Project
85
AMP
Genome assembly (visualization)
75
GRCh38
69
hg19
Lab
85
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed bedgraph
BIOSAMPLE
ASSAY
85 results
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DNase-seq
Hi-C
small RNA-seq
total RNA-seq
single cell RNA-seq
RRBS
ATAC-seq
FAIRE-seq
WGBS
tissue
muscle of arm
17
muscle of leg
13
1
brain
12
1
frontal cortex
2
1
1
1
gastrocnemius medialis
4
+ See 17 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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