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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
15
ChIP-seq
15
RRBS
14
ATAC-seq
12
WGBS
8
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
27
DNA methylation
16
DNA accessibility
15
DNA binding
8
3D chromatin structure
Target of assay
12
histone
12
histone modification
10
broad histone mark
6
control
2
narrow histone mark
Date released
711
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
272
October, 2019
218
June, 2019
202
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
99
bigWig
97
bam
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
19
bed narrowPeak
17
fastq
14
tagAlign
8
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
hdf5
Organism
131
Homo sapiens
Biosample type
100
tissue
31
primary cell
Organ
34
brain
25
heart
19
connective tissue
13
adipose tissue
13
epithelium
12
vasculature
11
blood vessel
11
kidney
11
pancreas
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
1
spleen
Project
131
AMP
Genome assembly (visualization)
104
hg19
93
GRCh38
Lab
130
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
bed bedgraph
month_released!
December, 2017
organ_slims!
nerve
BIOSAMPLE
ASSAY
131 results
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Clear Filters
total RNA-seq
small RNA-seq
ChIP-seq
RRBS
ATAC-seq
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
brain
15
1
heart left ventricle
2
1
2
4
body of pancreas
2
2
4
omental fat pad
4
1
1
right lobe of liver
2
2
1
+ See 27 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 20 more…
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