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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
100
ATAC-seq
23
ChIP-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
pCHi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
194
Transcription
100
DNA accessibility
23
DNA binding
1
3D chromatin structure
Target of assay
27
histone
27
histone modification
narrow histone mark
23
control
Date released
711
February, 2021
368
November, 2017
335
May, 2021
323
August, 2017
314
May, 2020
308
August, 2021
207
June, 2019
202
February, 2023
200
May, 2022
173
October, 2019
168
July, 2018
108
July, 2019
88
November, 2018
86
May, 2019
78
December, 2017
65
October, 2018
60
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
57
November, 2019
49
April, 2018
47
September, 2023
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
256
bam
233
bigWig
189
tsv
23
tagAlign
1
hic
Organism
315
Homo sapiens
Biosample type
166
tissue
148
primary cell
3
cell line
2
stem cell
Organ
167
liver
Project
269
AMP
45
T1D
4
community
1
ITG
Genome assembly (visualization)
233
hg19
189
GRCh38
Lab
269
AMP-T2D consortium
45
Kyle Gaulton, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
8
inconsistent ontology term
files.file_type!
bed bedgraph
organ_slims!
stomach
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
319 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
pCHi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
liver
143
23
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 25 more…
cell line
EndoC-BH1
1
1
HepG2
1
stem cell
SB Ad3.1
1
1
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