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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
total RNA-seq
51
single cell RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
2
FAIRE-seq
Assay category
233
Transcription
27
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
3
control
Date released
715
February, 2021
399
May, 2021
370
August, 2017
341
May, 2020
336
November, 2017
319
August, 2021
305
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
Available data
249
bigWig
246
bam
229
tsv
50
fastq
23
bed bedMethyl
23
bigBed bedMethyl
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
276
Homo sapiens
Biosample type
197
tissue
79
primary cell
Organ
163
pancreas
46
epithelium
25
heart
20
connective tissue
18
brain
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
276
AMP
Genome assembly (visualization)
255
hg19
243
GRCh38
Lab
276
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
files.file_type!
bed broadPeak
bigBed broadPeak
BIOSAMPLE
ASSAY
276 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
120
1
heart left ventricle
2
1
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 26 more…
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
pancreatic cell
3
+ See 35 more…
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