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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
single cell RNA-seq
43
ATAC-seq
39
ChIP-seq
6
Hi-C
5
total RNA-seq
4
pCHi-C
3
RRBS
3
WGBS
Assay category
104
Transcription
43
DNA accessibility
39
DNA binding
6
3D chromatin structure
6
DNA methylation
Target of assay
36
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
98
August, 2021
36
February, 2023
15
May, 2019
12
October, 2019
10
April, 2019
10
February, 2021
8
March, 2020
6
July, 2019
5
February, 2020
2
June, 2019
Available data
320
bam
bigWig
271
bed narrowPeak
181
tsv
172
bigBed narrowPeak
bed broadPeak
45
bigBed broadPeak
41
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
fastq
6
hic
6
tagAlign
5
bedpe bed3+
2
hdf5
1
tar
Organism
202
Homo sapiens
Biosample type
181
tissue
11
primary cell
10
cell line
Organ
322
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
202
AMP
Genome assembly (visualization)
43
GRCh38
17
hg19
Lab
202
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
bed broadPeak
bigWig
BIOSAMPLE
ASSAY
202 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
Hi-C
total RNA-seq
pCHi-C
RRBS
WGBS
tissue
coronary artery
35
2
1
heart left ventricle
18
6
1
1
1
2
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
+ See 15 more…
primary cell
endothelial cell of umbilical vein
5
2
cardiac fibroblast
2
1
choroid plexus epithelial cell
1
cell line
smooth muscle cell of the coronary artery
8
2
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