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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
194
DNA binding
24
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
171
histone
171
histone modification
109
narrow histone mark
62
broad histone mark
26
control
Date released
86
October, 2019
76
November, 2017
28
May, 2019
18
July, 2019
12
February, 2020
6
October, 2017
2
March, 2020
1
February, 2023
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
229
Homo sapiens
Biosample type
222
tissue
7
primary cell
Organ
575
connective tissue
464
pancreas
445
adipose tissue
363
heart
324
liver
276
kidney
249
epithelium
229
brain
217
vasculature
216
blood vessel
159
bone element
137
artery
86
limb
57
eye
48
musculature of body
41
nerve
18
vein
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
229
AMP
Genome assembly (visualization)
167
GRCh38
121
hg19
Lab
229
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
bed broadPeak
fastq
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
229 results
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ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
temporal lobe
15
1
1
substantia nigra
15
1
angular gyrus
15
caudate nucleus
14
1
+ See 72 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 1 more…
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