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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
84
RNA microarray
75
total RNA-seq
15
ATAC-seq
3
pCHi-C
Assay category
203
DNA binding
75
Transcription
15
DNA accessibility
Target of assay
175
histone
175
histone modification
109
narrow histone mark
66
broad histone mark
28
control
Date released
150
February, 2021
86
October, 2019
79
November, 2017
28
May, 2019
July, 2019
13
October, 2017
12
February, 2020
9
February, 2023
2
March, 2020
1
May, 2021
Available data
296
bam
264
bigWig
210
bed narrowPeak
126
bigBed narrowPeak
118
tagAlign
88
txt
73
tsv
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
21
fastq
5
bed bed3
1
tagAlign bed3+
Organism
380
Homo sapiens
Biosample type
376
tissue
4
primary cell
Organ
918
pancreas
718
liver
656
connective tissue
489
epithelium
476
adipose tissue
338
heart
265
kidney
221
brain
207
vasculature
206
blood vessel
159
bone element
134
artery
81
limb
69
blood
69
bodily fluid
56
eye
41
nerve
40
musculature of body
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
379
AMP
1
T1D
Genome assembly (visualization)
225
GRCh38
180
hg19
Lab
379
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
87
inconsistent ontology term
Audit category:
2
missing controlled_by
files.file_type!
bed broadPeak
hdf5
month_released!
July, 2019
BIOSAMPLE
ASSAY
380 results
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ChIP-seq
RNA microarray
total RNA-seq
ATAC-seq
pCHi-C
tissue
bone element
84
bone tissue
58
layer of hippocampus
23
brain
17
1
1
substantia nigra
15
1
+ See 84 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
megakaryocyte
1
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