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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 167ChIP-seq
  • 4RRBS
Assay category
  • 167DNA binding
  • 4DNA methylation
Target of assay
  • 58histone
  • 58histone modification
  • 55transcription factor
  • 54control
  • 29broad histone mark
  • 29narrow histone mark
  • 13RNA binding protein
  • 12chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 54November, 2017
  • 49August, 2017
  • 26December, 2017
  • 22February, 2018
  • 7November, 2018
  • 6October, 2017
  • 6September, 2017
  • 1January, 2019
Available data
  • 264fastq
  • 258bam
  • 215bigWig
  • 200bed narrowPeak
  • 148bigBed narrowPeak
  • bed broadPeak
  • 84bigBed broadPeak
  • 39tagAlign
  • 37bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 170Homo sapiens
Biosample type
  • 59cell line
  • 43in vitro differentiated cells
  • 39tissue
  • 28primary cell
  • 2stem cell
Organ
  • 65liver
  • 44pancreas
  • 27epithelium
  • 18embryo
  • 9brain
  • 2adipose tissue
  • 2connective tissue
  • 2musculature of body
  • 2vasculature
  • 1blood
  • 1blood vessel
  • 1bodily fluid
Project
  • 171AMP
Genome assembly (visualization)
  • 133hg19
  • 109GRCh38
Lab
  • 171AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 13missing controlled_by
Audit category:
  • 18inconsistent control read length
  • 9inconsistent control run_type
  • 1inconsistent assembly
files.file_type!
  • bed broadPeak
BIOSAMPLE
ASSAY

171 results

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Clear Filters
ChIP-seq
RRBS
cell line
HepG258
GM128781
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
tissue
islet of Langerhans18
liver61
brain6
pancreas4
adipose tissue2
primary cell
pancreatic alpha cell11
pancreatic beta cell11
skeletal muscle myoblast21
astrocyte of the cerebellum1
brain microvascular endothelial cell1
stem cell
hESC2
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