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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
336
ChIP-seq
10
MeRIP-seq
4
ATAC-seq
4
total RNA-seq
1
Hi-C
Assay category
336
DNA binding
4
DNA accessibility
4
Transcription
1
3D chromatin structure
Target of assay
197
transcription factor
76
control
66
recombinant protein
65
histone
65
histone modification
40
broad histone mark
30
RNA binding protein
25
narrow histone mark
11
chromatin remodeller
5
nucleotide modification
1
other context
1
other post-translational modification
Date released
715
February, 2021
399
May, 2021
370
August, 2017
341
May, 2020
336
November, 2017
305
October, 2019
205
February, 2023
200
May, 2022
191
August, 2021
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
399
bam
339
bigWig
325
fastq
315
bed narrowPeak
313
bigBed narrowPeak
78
tagAlign
bed broadPeak
65
bigBed broadPeak
4
tsv
3
tar
1
bed bed3+
1
bedpe
1
hic
Organism
355
Homo sapiens
Biosample type
263
cell line
84
tissue
8
primary cell
Organ
257
liver
79
brain
14
pancreas
8
epithelium
5
connective tissue
2
vasculature
1
blood vessel
Project
355
AMP
Genome assembly (visualization)
232
GRCh38
219
hg19
Lab
341
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
6
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
8
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bed broadPeak
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
355 results
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Clear Filters
ChIP-seq
MeRIP-seq
ATAC-seq
total RNA-seq
Hi-C
cell line
HepG2
257
EndoC_BH1
6
tissue
layer of hippocampus
22
caudate nucleus
14
substantia nigra
14
cingulate gyrus
12
middle frontal area 46
12
+ See 2 more…
primary cell
osteoblast
1
4
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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