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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
8
snATAC-seq
1
ATAC-seq
Assay category
45
DNA binding
9
DNA accessibility
Target of assay
39
transcription factor
8
RNA binding protein
8
chromatin remodeller
3
control
1
histone
1
histone modification
1
narrow histone mark
Date released
27
December, 2018
18
January, 2019
November, 2018
8
January, 2021
1
January, 2018
Available data
45
bam
45
fastq
43
bigWig
42
bed narrowPeak
42
bigBed narrowPeak
Organism
54
Homo sapiens
Biosample type
46
cell line
8
primary cell
Organ
917
pancreas
678
liver
674
connective tissue
497
epithelium
488
adipose tissue
342
heart
271
kidney
211
brain
169
vasculature
167
blood vessel
159
bone element
132
artery
79
limb
57
eye
54
blood
54
bodily fluid
43
musculature of body
41
nerve
37
embryo
20
lung
18
vein
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
46
AMP
8
T1D
Genome assembly (visualization)
43
hg19
42
GRCh38
Lab
46
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
files.file_type!
bed broadPeak
lab.title!
Mark McCarthy, Oxford
month_released!
May, 2019
November, 2018
BIOSAMPLE
ASSAY
54 results
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ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878
45
1
primary cell
peripheral blood mononuclear cell
8
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