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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
38
ChIP-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
58
Transcription
45
DNA accessibility
38
DNA binding
Target of assay
24
histone
24
histone modification
14
broad histone mark
10
narrow histone mark
9
control
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
28
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
1
March, 2020
Available data
102
bam
85
bigWig
74
bed narrowPeak
59
tsv
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
bed broadPeak
4
bigBed broadPeak
Organism
142
Homo sapiens
Biosample type
74
tissue
66
cell line
2
primary cell
Organ
706
pancreas
669
connective tissue
657
liver
488
adipose tissue
344
epithelium
323
heart
239
brain
219
vasculature
217
blood vessel
158
bone element
137
artery
86
limb
85
kidney
61
blood
61
bodily fluid
57
eye
50
musculature of body
41
nerve
37
embryo
24
spleen
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
142
AMP
Genome assembly (visualization)
124
GRCh38
89
hg19
Lab
142
AMP-T2D consortium
files.file_type!
bed broadPeak
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
142 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
tissue
coronary artery
1
36
5
tibial artery
1
1
23
islet of Langerhans
4
pulmonary artery
2
ovary
1
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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