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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
15
DNA binding
2
3D chromatin structure
1
DNA accessibility
Target of assay
13
histone
13
histone modification
7
broad histone mark
6
narrow histone mark
2
control
Date released
17
October, 2019
2
March, 2020
Available data
20
bam
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
1
tsv
Organism
19
Homo sapiens
Biosample type
18
primary cell
1
tissue
Organ
706
pancreas
669
connective tissue
657
liver
488
adipose tissue
344
epithelium
323
heart
239
brain
219
vasculature
217
blood vessel
158
bone element
137
artery
86
limb
85
kidney
61
blood
61
bodily fluid
57
eye
50
musculature of body
41
nerve
37
embryo
24
spleen
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
19
AMP
Genome assembly (visualization)
13
hg19
10
GRCh38
Lab
19
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
audit script error
files.file_type!
bed broadPeak
month_released!
March, 2019
BIOSAMPLE
ASSAY
19 results
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ChIP-seq
Hi-C
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
15
2
1
tissue
lung
1
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