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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
545
total RNA-seq
84
RNA microarray
29
ATAC-seq
20
ChIP-seq
6
single cell RNA-seq
3
snDrop-seq
2
pCHi-C
Assay category
551
Transcription
29
DNA accessibility
20
DNA binding
Target of assay
9
histone
9
histone modification
8
broad histone mark
6
control
5
transcription factor
1
narrow histone mark
Date released
670
February, 2021
370
August, 2017
336
November, 2017
305
October, 2019
296
May, 2020
July, 2018
164
May, 2021
151
August, 2021
120
May, 2019
108
July, 2019
103
February, 2023
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
49
April, 2018
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
19
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
5
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
587
bam
564
bigWig
553
tsv
89
txt
35
bed narrowPeak
22
tagAlign
16
fastq
6
bigBed narrowPeak
6
csv
4
bed bedgraph
bed broadPeak
2
bed bed3
2
bed bed3+
Organism
689
Homo sapiens
Biosample type
564
tissue
96
cell line
26
in vitro differentiated cells
3
primary cell
Organ
456
connective tissue
387
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
30
pancreas
26
epithelium
13
brain
8
kidney
8
skeleton
6
limb
3
liver
1
spleen
Project
689
AMP
Genome assembly (visualization)
583
hg19
578
GRCh38
Lab
689
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
5
audit script error
1
inconsistent replicate
Audit category:
2
missing controlled_by
files.file_type!
bed broadPeak
month_released!
July, 2018
BIOSAMPLE
ASSAY
689 results
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total RNA-seq
RNA microarray
ATAC-seq
ChIP-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
brain
12
kidney
5
+ See 18 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
primary cell
osteoblast
1
1
1
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