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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
496
ChIP-seq
160
total RNA-seq
7
WGBS
4
ATAC-seq
4
pCHi-C
3
Hi-C
3
small RNA-seq
2
RRBS
1
DNase-seq
1
single cell RNA-seq
Assay category
496
DNA binding
164
Transcription
9
DNA methylation
5
DNA accessibility
3
3D chromatin structure
Target of assay
289
transcription factor
112
control
92
histone modification
91
histone
82
recombinant protein
54
narrow histone mark
53
RNA binding protein
37
broad histone mark
19
chromatin remodeller
4
other context
4
other post-translational modification
Date released
257
November, 2017
194
May, 2020
63
December, 2017
58
November, 2018
54
August, 2017
12
January, 2019
10
July, 2019
8
December, 2018
7
October, 2019
5
December, 2019
4
August, 2021
4
March, 2020
3
February, 2021
1
February, 2020
1
October, 2017
Available data
705
bam
604
bigWig
489
fastq
421
bed narrowPeak
371
bigBed narrowPeak
166
tsv
86
tagAlign
bed broadPeak
64
bigBed broadPeak
14
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
681
Homo sapiens
Biosample type
342
tissue
312
cell line
15
in vitro differentiated cells
12
primary cell
Organ
706
pancreas
669
connective tissue
657
liver
488
adipose tissue
344
epithelium
323
heart
239
brain
219
vasculature
217
blood vessel
158
bone element
137
artery
86
limb
85
kidney
61
blood
61
bodily fluid
57
eye
50
musculature of body
41
nerve
37
embryo
24
spleen
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
681
AMP
Genome assembly (visualization)
540
hg19
497
GRCh38
Lab
681
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
681 results
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ChIP-seq
total RNA-seq
WGBS
ATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
DNase-seq
single cell RNA-seq
tissue
liver
145
147
3
1
1
1
1
1
spleen
20
2
1
1
right lobe of liver
10
3
1
1
2
1
cell line
HepG2
302
5
1
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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