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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
472
ChIP-seq
180
total RNA-seq
23
ATAC-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
DNase-seq
1
single cell RNA-seq
Assay category
472
DNA binding
184
Transcription
24
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
283
transcription factor
103
control
83
histone modification
82
histone
82
recombinant protein
53
RNA binding protein
50
narrow histone mark
32
broad histone mark
19
chromatin remodeller
1
other context
1
other post-translational modification
Date released
257
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
50
November, 2018
40
May, 2022
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
Available data
677
bam
605
bigWig
465
fastq
424
bed narrowPeak
358
bigBed narrowPeak
165
tsv
82
tagAlign
bed broadPeak
63
bigBed broadPeak
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
693
Homo sapiens
Biosample type
358
tissue
312
cell line
15
in vitro differentiated cells
8
primary cell
Organ
921
pancreas
693
liver
669
connective tissue
496
epithelium
487
adipose tissue
271
heart
239
brain
213
vasculature
211
blood vessel
159
bone element
146
kidney
135
artery
86
limb
69
blood
69
bodily fluid
57
eye
50
musculature of body
41
nerve
29
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
spinal cord
1
stomach
1
urinary bladder
Project
693
AMP
Genome assembly (visualization)
544
hg19
479
GRCh38
Lab
653
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed broadPeak
month_released!
August, 2021
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
693 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
DNase-seq
single cell RNA-seq
tissue
liver
145
167
20
3
1
1
1
1
1
right lobe of liver
10
3
1
1
2
1
cell line
HepG2
302
5
1
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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