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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
61
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
399
Transcription
61
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
31
histone
31
histone modification
24
control
20
broad histone mark
17
transcription factor
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
45
August, 2017
23
October, 2018
12
July, 2019
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
441
bam
423
bigWig
399
tsv
43
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
5
tagAlign
2
bed bedMethyl
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
474
Homo sapiens
Biosample type
472
tissue
2
primary cell
1
in vitro differentiated cells
Organ
855
pancreas
673
liver
640
connective tissue
475
adipose tissue
455
epithelium
320
heart
261
kidney
192
vasculature
190
blood vessel
159
bone element
129
artery
118
brain
68
blood
68
bodily fluid
68
limb
53
eye
40
musculature of body
32
nerve
29
embryo
22
spleen
20
lung
skeleton
12
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
475
AMP
Genome assembly (visualization)
422
hg19
421
GRCh38
Lab
475
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bed broadPeak
month_released!
February, 2020
organ_slims!
skeleton
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
475 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
3
1
subcutaneous abdominal adipose tissue
25
3
subcutaneous adipose tissue
6
12
1
1
1
omental fat pad
4
11
1
1
white adipose tissue
12
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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