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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
Assay category
13
DNA binding
Target of assay
54
transcription factor
13
control
13
histone
13
histone modification
10
RNA binding protein
10
chromatin remodeller
9
narrow histone mark
4
broad histone mark
Date released
6
December, 2017
6
February, 2018
1
January, 2019
Available data
13
bam
13
fastq
12
bed narrowPeak
12
bigWig
2
bed bed3+
1
bigBed narrowPeak
Organism
13
Homo sapiens
Biosample type
12
in vitro differentiated cells
1
cell line
Organ
175
brain
139
pancreas
97
heart
89
epithelium
89
liver
77
connective tissue
67
blood vessel
67
vasculature
49
limb
31
adipose tissue
30
kidney
24
nerve
20
artery
20
musculature of body
13
vein
12
embryo
6
spleen
4
gonad
4
ovary
3
eye
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
13
AMP
Genome assembly (visualization)
12
GRCh38
12
hg19
Lab
13
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed broadPeak
month_released!
January, 2018
BIOSAMPLE
ASSAY
13 results
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ChIP-seq
in vitro differentiated cells
pancreatic endoderm
10
Hepatic endoderm
2
cell line
GM12878
1
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