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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
48
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
48
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
31
histone
31
histone modification
control
20
broad histone mark
17
transcription factor
11
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
50
August, 2017
12
July, 2019
5
October, 2018
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
425
bigWig
423
bam
401
tsv
25
fastq
13
bed narrowPeak
10
bigBed narrowPeak
7
tagAlign
6
bed bed3+
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
463
Homo sapiens
Biosample type
461
tissue
2
primary cell
1
in vitro differentiated cells
Organ
871
pancreas
639
connective tissue
620
liver
468
epithelium
464
adipose tissue
328
heart
260
kidney
183
brain
159
bone element
158
vasculature
157
blood vessel
125
artery
63
blood
63
bodily fluid
63
limb
56
eye
38
musculature of body
30
embryo
30
nerve
20
lung
16
skeleton
16
spleen
16
vein
5
gonad
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
464
AMP
Genome assembly (visualization)
423
hg19
422
GRCh38
Lab
464
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bed broadPeak
month_released!
May, 2019
organ_slims!
ovary
target.investigated_as!
control
BIOSAMPLE
ASSAY
464 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
3
1
subcutaneous abdominal adipose tissue
30
3
subcutaneous adipose tissue
7
2
1
1
1
white adipose tissue
12
omental fat pad
5
3
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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