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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
16
total RNA-seq
12
single cell RNA-seq
10
snATAC-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
FAIRE-seq
Assay category
119
DNA binding
32
Transcription
14
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
98
histone
98
histone modification
63
broad histone mark
35
narrow histone mark
24
control
Date released
October, 2019
79
November, 2017
28
May, 2019
19
April, 2020
18
July, 2019
13
October, 2017
12
February, 2020
3
March, 2020
1
February, 2023
Available data
160
bam
146
bigWig
128
bed narrowPeak
127
bigBed narrowPeak
80
tagAlign
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
172
Homo sapiens
Biosample type
163
tissue
10
primary cell
Organ
804
pancreas
681
liver
670
connective tissue
487
adipose tissue
391
epithelium
355
heart
246
kidney
178
vasculature
176
blood vessel
159
bone element
153
brain
113
artery
69
blood
69
bodily fluid
48
musculature of body
37
embryo
36
eye
24
spleen
21
limb
20
lung
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
154
AMP
19
LungMap
Genome assembly (visualization)
93
GRCh38
49
hg19
Lab
154
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
files.file_type!
bed broadPeak
month_released!
May, 2022
October, 2019
BIOSAMPLE
ASSAY
173 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
small RNA-seq
ATAC-seq
Hi-C
pCHi-C
RRBS
FAIRE-seq
tissue
layer of hippocampus
22
lung
9
10
1
temporal lobe
15
1
1
caudate nucleus
14
1
substantia nigra
14
1
+ See 17 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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