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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
29
ATAC-seq
19
total RNA-seq
8
snATAC-seq
4
pCHi-C
1
RRBS
Assay category
65
DNA binding
37
DNA accessibility
19
Transcription
1
DNA methylation
Target of assay
52
transcription factor
11
RNA binding protein
10
chromatin remodeller
7
control
4
histone
4
histone modification
4
narrow histone mark
Date released
31
February, 2023
27
December, 2018
21
October, 2019
18
January, 2019
15
November, 2018
8
January, 2021
3
June, 2019
1
February, 2020
1
January, 2018
1
July, 2019
Available data
87
bed narrowPeak
67
bam
61
bigWig
60
bigBed narrowPeak
60
fastq
5
tsv
4
bed bed3+
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
126
Homo sapiens
Biosample type
61
cell line
53
tissue
12
primary cell
Organ
925
pancreas
674
connective tissue
500
epithelium
488
adipose tissue
471
liver
363
heart
276
kidney
217
vasculature
216
blood vessel
160
brain
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
57
eye
50
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
118
AMP
8
T1D
Genome assembly (visualization)
85
hg19
56
GRCh38
Lab
118
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
files.file_type!
bed broadPeak
month_released!
November, 2017
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
126 results
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ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
pCHi-C
RRBS
cell line
GM12878
60
1
tissue
islet of Langerhans
2
1
14
4
retina
15
3
pigmented layer of retina
12
2
primary cell
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
3
1
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