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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
total RNA-seq
45
ATAC-seq
34
ChIP-seq
2
single cell RNA-seq
1
RRBS
Assay category
59
Transcription
45
DNA accessibility
34
DNA binding
1
DNA methylation
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
24
October, 2019
5
July, 2019
5
May, 2019
2
August, 2021
2
February, 2020
Available data
103
bam
86
bigWig
74
bed narrowPeak
59
tsv
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
139
Homo sapiens
Biosample type
70
tissue
66
cell line
3
primary cell
Organ
915
pancreas
728
liver
669
connective tissue
496
epithelium
488
adipose tissue
363
heart
276
kidney
239
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
57
eye
50
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
urinary bladder
Project
139
AMP
Genome assembly (visualization)
125
GRCh38
91
hg19
Lab
139
AMP-T2D consortium
files.file_type!
bed broadPeak
month_released!
November, 2020
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
139 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
RRBS
tissue
coronary artery
1
36
5
tibial artery
1
1
23
pulmonary artery
2
pericardium
1
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
pericardium fibroblast
1
smooth muscle cell of the coronary artery
1
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