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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
3
DNase-seq
3
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
22
DNA binding
5
DNA accessibility
3
Transcription
1
3D chromatin structure
Target of assay
19
histone
19
histone modification
10
broad histone mark
9
narrow histone mark
3
control
Date released
80
May, 2022
61
September, 2018
52
February, 2023
33
April, 2018
33
July, 2018
32
February, 2021
31
October, 2019
29
August, 2017
26
May, 2021
19
December, 2017
19
September, 2020
16
November, 2019
13
July, 2019
7
August, 2020
6
August, 2021
6
December, 2019
6
June, 2019
6
March, 2020
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
November, 2017
2
October, 2018
1
June, 2018
0
April, 2020
Available data
32
bam
25
bigWig
21
bed narrowPeak
14
bigBed narrowPeak
bed broadPeak
4
bigBed broadPeak
3
tsv
2
bed bed3+
1
hic
1
tar
Organism
31
Homo sapiens
Biosample type
29
primary cell
2
cell line
Organ
86
brain
65
limb
41
blood vessel
41
vasculature
40
nerve
31
epithelium
30
kidney
24
artery
21
eye
19
lung
17
pancreas
17
vein
8
heart
7
liver
4
connective tissue
4
gonad
4
ovary
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
31
AMP
Genome assembly (visualization)
23
hg19
21
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bed broadPeak
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
31 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
15
1
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
Liver fetal (hepatocyte)
1
cell line
glomerular visceral epithelial cell
1
1
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