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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
3
DNase-seq
1
FAIRE-seq
Assay category
95
DNA binding
89
Transcription
15
DNA methylation
9
DNA accessibility
Target of assay
histone modification
161
histone
87
broad histone mark
73
narrow histone mark
50
control
45
transcription factor
6
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
314
May, 2020
299
August, 2021
271
November, 2017
259
May, 2021
208
August, 2017
205
February, 2023
200
May, 2022
168
July, 2018
110
October, 2019
108
July, 2019
79
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
12
June, 2019
11
September, 2017
10
December, 2019
10
October, 2017
8
January, 2018
7
August, 2020
5
March, 2023
5
May, 2024
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
Available data
184
fastq
179
bam
149
bigWig
89
tsv
34
bed narrowPeak
21
bed bed3+
12
bigBed narrowPeak
11
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
bed broadPeak
4
bigBed broadPeak
Organism
207
Homo sapiens
Biosample type
160
tissue
30
in vitro differentiated cells
18
primary cell
Organ
122
pancreas
55
connective tissue
25
adipose tissue
21
liver
15
epithelium
7
musculature of body
Project
208
AMP
Genome assembly (visualization)
149
hg19
144
GRCh38
Lab
208
AMP-T2D consortium
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bed broadPeak
organ_slims!
pituitary gland
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
208 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
14
89
1
1
liver
15
3
1
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
skeletal muscle tissue
3
4
+ See 4 more…
in vitro differentiated cells
adipocyte
30
primary cell
pancreatic alpha cell
6
1
pancreatic beta cell
6
1
skeletal muscle myoblast
1
1
1
pancreatic acinar cell
1
See all biosamples
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