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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
9
total RNA-seq
2
STARR-seq
2
single cell RNA-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
22
DNA binding
11
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
6
histone
6
histone modification
5
control
4
narrow histone mark
2
broad histone mark
1
RNA binding protein
Date released
257
November, 2017
194
May, 2020
69
February, 2021
63
December, 2017
54
August, 2017
50
November, 2018
40
May, 2022
37
August, 2021
35
February, 2023
31
October, 2019
13
July, 2019
5
December, 2019
5
January, 2019
5
May, 2019
3
February, 2020
3
March, 2020
1
December, 2018
Available data
17
bed narrowPeak
17
bigWig
11
tsv
4
bam
4
tagAlign
3
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
37
Homo sapiens
Biosample type
31
cell line
4
primary cell
2
tissue
Organ
130
kidney
92
heart
35
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
37
AMP
Genome assembly (visualization)
18
hg19
3
GRCh38
Lab
31
Bing Ren, UCSD
6
AMP-T2D consortium
files.file_type!
bed broadPeak
organ_slims!
ovary
BIOSAMPLE
ASSAY
37 results
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Clear Filters
ChIP-seq
total RNA-seq
STARR-seq
single cell RNA-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
primary cell
hepatocyte
4
tissue
pulmonary artery
2
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