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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
11
ATAC-seq
3
single cell RNA-seq
1
Hi-C
1
total RNA-seq
Assay category
34
DNA binding
11
DNA accessibility
4
Transcription
1
3D chromatin structure
Target of assay
28
transcription factor
4
control
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
314
May, 2020
299
August, 2021
271
November, 2017
259
May, 2021
209
August, 2017
205
February, 2023
200
May, 2022
168
July, 2018
111
October, 2019
108
July, 2019
79
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
12
June, 2019
11
September, 2017
10
December, 2019
10
October, 2017
8
January, 2018
7
August, 2020
5
March, 2023
5
May, 2024
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
Available data
35
fastq
34
bam
30
bed narrowPeak
30
bigBed narrowPeak
30
bigWig
Organism
50
Homo sapiens
Biosample type
28
cell line
22
tissue
Organ
27
blood
27
bodily fluid
14
kidney
7
spleen
1
adipose tissue
1
connective tissue
1
liver
Project
50
AMP
Genome assembly (visualization)
42
GRCh38
31
hg19
Lab
36
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
1
inconsistent control
files.file_type!
bed broadPeak
month_released!
November, 2019
target.investigated_as!
histone
BIOSAMPLE
ASSAY
50 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
Hi-C
total RNA-seq
cell line
GM12878
27
HepG2
1
tissue
kidney
11
3
spleen
7
adipose tissue
1
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