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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ATAC-seq
47
total RNA-seq
21
ChIP-seq
6
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
101
DNA accessibility
48
Transcription
21
DNA binding
6
DNA methylation
Target of assay
15
transcription factor
6
control
3
other context
3
other post-translational modification
2
RNA binding protein
2
chromatin remodeller
Date released
712
February, 2021
399
May, 2021
316
August, 2017
298
October, 2019
284
August, 2021
205
February, 2023
168
July, 2018
160
May, 2022
147
May, 2020
120
May, 2019
98
July, 2019
80
April, 2019
79
November, 2017
76
October, 2018
73
September, 2018
61
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
34
December, 2018
31
December, 2017
31
June, 2019
29
November, 2018
25
January, 2019
24
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2023
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
Available data
124
bam
118
bigWig
45
tsv
35
fastq
22
bed narrowPeak
22
bigBed narrowPeak
6
bed bed3+
6
bed bedMethyl
bed broadPeak
6
bigBed bedMethyl
6
bigBed broadPeak
1
csv
Organism
176
Homo sapiens
Biosample type
148
primary cell
15
cell line
13
tissue
Organ
liver
15
blood
15
bodily fluid
8
spleen
5
pancreas
Project
131
AMP
45
T1D
Genome assembly (visualization)
106
hg19
66
GRCh38
Lab
131
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
files.file_type!
bed broadPeak
organ_slims!
liver
BIOSAMPLE
ASSAY
176 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
WGBS
FAIRE-seq
single cell RNA-seq
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 25 more…
cell line
GM12878
15
tissue
spleen
6
2
pancreas
2
1
body of pancreas
2
See all biosamples
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