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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
265
ChIP-seq
11
ATAC-seq
3
single cell RNA-seq
1
total RNA-seq
Assay category
265
DNA binding
11
DNA accessibility
4
Transcription
Target of assay
197
transcription factor
control
66
recombinant protein
65
histone
65
histone modification
40
broad histone mark
30
RNA binding protein
25
narrow histone mark
11
chromatin remodeller
1
other context
1
other post-translational modification
Date released
712
February, 2021
390
May, 2021
320
August, 2017
318
May, 2020
307
August, 2021
266
October, 2019
265
November, 2017
205
February, 2023
200
May, 2022
168
July, 2018
105
July, 2019
97
May, 2019
73
December, 2017
73
November, 2018
73
September, 2018
66
April, 2019
64
March, 2020
November, 2019
59
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
40
May, 2024
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
23
June, 2019
19
April, 2020
16
January, 2021
16
October, 2017
15
May, 2023
10
December, 2019
10
November, 2020
8
January, 2018
7
August, 2020
5
March, 2023
5
September, 2017
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
Available data
321
bam
318
bigWig
313
bed narrowPeak
312
bigBed narrowPeak
265
fastq
bed broadPeak
67
tagAlign
64
bigBed broadPeak
3
tar
Organism
280
Homo sapiens
Biosample type
201
cell line
79
tissue
Organ
201
liver
64
brain
14
kidney
1
adipose tissue
1
connective tissue
Project
280
AMP
Genome assembly (visualization)
237
GRCh38
196
hg19
Lab
266
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
10
missing controlled_by
Audit category:
8
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bed broadPeak
month_released!
November, 2019
target.investigated_as!
control
BIOSAMPLE
ASSAY
280 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
cell line
HepG2
201
tissue
layer of hippocampus
19
kidney
11
3
caudate nucleus
12
substantia nigra
12
cingulate gyrus
10
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