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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
381
ChIP-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
381
DNA binding
7
DNA methylation
1
DNA accessibility
1
Transcription
Target of assay
261
transcription factor
82
recombinant protein
77
control
65
histone
65
histone modification
51
RNA binding protein
40
broad histone mark
narrow histone mark
18
chromatin remodeller
4
other context
4
other post-translational modification
Date released
335
May, 2021
329
February, 2021
314
May, 2020
311
November, 2017
307
August, 2021
252
August, 2017
204
February, 2023
200
May, 2022
168
July, 2018
163
October, 2019
96
July, 2019
86
May, 2019
79
November, 2018
78
December, 2017
60
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
56
November, 2019
49
April, 2018
47
September, 2023
42
October, 2018
35
December, 2018
31
February, 2018
27
January, 2019
25
May, 2024
23
February, 2020
20
June, 2019
19
April, 2020
17
October, 2017
16
January, 2021
15
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2023
4
March, 2019
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
449
bam
401
fastq
383
bigWig
356
bed narrowPeak
356
bigBed narrowPeak
bed broadPeak
63
bigBed broadPeak
52
tagAlign
8
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
1
csv
Organism
390
Homo sapiens
Biosample type
317
cell line
69
tissue
4
primary cell
Organ
306
liver
55
brain
15
blood
15
bodily fluid
8
spleen
5
pancreas
2
epithelium
2
vasculature
1
blood vessel
Project
390
AMP
Genome assembly (visualization)
278
GRCh38
272
hg19
Lab
390
AMP-T2D consortium
Audit category:
12
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed broadPeak
organ_slims!
adipose tissue
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
390 results
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Clear Filters
ChIP-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
301
1
GM12878
15
tissue
layer of hippocampus
15
caudate nucleus
10
substantia nigra
10
cingulate gyrus
8
middle frontal area 46
8
+ See 5 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
pancreatic cell
1
See all biosamples
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