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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
422
ChIP-seq
10
MeRIP-seq
8
ATAC-seq
6
total RNA-seq
Assay category
422
DNA binding
8
DNA accessibility
6
Transcription
Target of assay
212
transcription factor
108
control
104
histone
104
histone modification
67
broad histone mark
66
recombinant protein
41
RNA binding protein
37
narrow histone mark
11
chromatin remodeller
5
nucleotide modification
1
other context
1
other post-translational modification
Date released
715
February, 2021
399
May, 2021
370
August, 2017
341
May, 2020
336
November, 2017
319
August, 2021
305
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
Available data
489
bam
401
fastq
400
bigWig
372
bed narrowPeak
364
bigBed narrowPeak
92
tagAlign
bed broadPeak
65
bigBed broadPeak
6
tsv
3
tar
1
bed bed3+
Organism
446
Homo sapiens
Biosample type
263
cell line
173
tissue
10
primary cell
Organ
257
liver
92
brain
67
pancreas
29
connective tissue
24
adipose tissue
10
epithelium
2
vasculature
1
blood vessel
1
spleen
Project
446
AMP
Genome assembly (visualization)
287
GRCh38
272
hg19
Lab
436
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
9
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
446 results
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Clear Filters
ChIP-seq
MeRIP-seq
ATAC-seq
total RNA-seq
cell line
HepG2
257
EndoC_BH1
6
tissue
body of pancreas
33
4
layer of hippocampus
22
endocrine pancreas
16
caudate nucleus
14
substantia nigra
14
+ See 9 more…
primary cell
osteoblast
1
4
pancreatic acinar cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
See all biosamples
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