Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
68
total RNA-seq
27
ChIP-seq
13
ATAC-seq
6
Hi-C
5
RRBS
3
pCHi-C
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
71
Transcription
27
DNA binding
14
DNA accessibility
6
3D chromatin structure
6
DNA methylation
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
6
control
Date released
150
February, 2021
13
August, 2017
10
July, 2019
10
June, 2019
8
February, 2023
7
May, 2019
6
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
May, 2021
1
October, 2019
Available data
126
bigWig
123
bam
89
txt
68
bed narrowPeak
68
tsv
47
bigBed narrowPeak
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bed3
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
211
Homo sapiens
Biosample type
197
tissue
14
primary cell
Organ
925
pancreas
728
liver
674
connective tissue
502
epithelium
488
adipose tissue
363
heart
276
kidney
239
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
57
eye
50
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
210
AMP
1
T1D
Genome assembly (visualization)
97
hg19
86
GRCh38
Lab
210
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
92
inconsistent ontology term
1
audit script error
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
211 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
bone element
84
bone tissue
58
skeletal muscle tissue
1
9
1
4
1
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
+ See 16 more…
primary cell
skeletal muscle satellite cell
1
8
1
skeletal muscle cell
2
1
megakaryocyte
1
See all biosamples
Download