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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
12
ATAC-seq
2
ChIP-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
62
Transcription
13
DNA accessibility
2
3D chromatin structure
2
DNA binding
Target of assay
13
histone
histone modification
7
broad histone mark
6
narrow histone mark
2
control
Date released
150
February, 2021
8
February, 2023
4
October, 2019
1
March, 2020
1
May, 2021
Available data
88
txt
71
bam
61
bigWig
58
tsv
11
bed narrowPeak
4
bed bed3
3
bigBed narrowPeak
2
bed bed3+
bed broadPeak
2
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
164
Homo sapiens
Biosample type
158
tissue
6
primary cell
Organ
786
pancreas
639
liver
597
connective tissue
457
adipose tissue
413
epithelium
266
heart
246
kidney
159
bone element
152
vasculature
150
blood vessel
117
artery
68
blood
68
bodily fluid
64
brain
54
eye
37
limb
30
musculature of body
25
embryo
20
lung
18
spleen
17
nerve
16
skeleton
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
163
AMP
1
T1D
Genome assembly (visualization)
73
hg19
66
GRCh38
Lab
163
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
audit script error
files.file_type!
bed broadPeak
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
164 results
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RNA microarray
total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
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primary cell
endothelial cell of umbilical vein
2
2
1
megakaryocyte
1
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