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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
17
total RNA-seq
5
Hi-C
4
ATAC-seq
4
pCHi-C
4
small RNA-seq
3
single cell RNA-seq
2
FAIRE-seq
2
RRBS
Assay category
218
DNA binding
24
Transcription
6
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
188
histone
188
histone modification
115
narrow histone mark
73
broad histone mark
33
control
Date released
103
October, 2019
79
November, 2017
28
May, 2019
18
July, 2019
13
October, 2017
12
February, 2020
4
March, 2020
1
February, 2023
1
May, 2021
Available data
263
bam
237
bigWig
216
bed narrowPeak
140
bigBed narrowPeak
118
tagAlign
bed broadPeak
42
bigBed broadPeak
37
bed bed3+
27
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bed bed3
1
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
259
Homo sapiens
Biosample type
231
tissue
28
primary cell
Organ
925
pancreas
728
liver
674
connective tissue
502
epithelium
adipose tissue
363
heart
276
kidney
239
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
57
eye
50
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
258
AMP
1
T1D
Genome assembly (visualization)
181
GRCh38
140
hg19
Lab
258
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
2
missing controlled_by
files.file_type!
bed broadPeak
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
259 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
pCHi-C
small RNA-seq
single cell RNA-seq
FAIRE-seq
RRBS
tissue
layer of hippocampus
23
brain
17
1
1
1
temporal lobe
15
1
1
substantia nigra
15
1
angular gyrus
15
+ See 73 more…
primary cell
endothelial cell of umbilical vein
15
2
1
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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