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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 203ChIP-seq
  • 17total RNA-seq
  • 4ATAC-seq
  • 4small RNA-seq
  • 3Hi-C
  • 3single cell RNA-seq
  • 2RRBS
  • 2pCHi-C
  • 1FAIRE-seq
Assay category
  • 203DNA binding
  • 24Transcription
  • 5DNA accessibility
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 175histone
  • 175histone modification
  • 109narrow histone mark
  • 66broad histone mark
  • 31control
Date released
  • 86October, 2019
  • 79November, 2017
  • 28May, 2019
  • 18July, 2019
  • 13October, 2017
  • 12February, 2020
  • 2March, 2020
  • 1February, 2023
Available data
  • 243bam
  • 222bigWig
  • 203bed narrowPeak
  • 127bigBed narrowPeak
  • 118tagAlign
  • bed broadPeak
  • 38bigBed broadPeak
  • 35bed bed3+
  • 26tsv
  • 21fastq
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
  • 1tagAlign bed3+
Organism
  • 239Homo sapiens
Biosample type
  • 229tissue
  • 10primary cell
Organ
  • 925pancreas
  • 728liver
  • 674connective tissue
  • 502epithelium
  • 488adipose tissue
  • 363heart
  • 276kidney
  • 239brain
  • 219vasculature
  • 217blood vessel
  • 159bone element
  • 137artery
  • 86limb
  • 69blood
  • 69bodily fluid
  • 57eye
  • 50musculature of body
  • 41nerve
  • 37embryo
  • 24spleen
  • 20lung
  • 18vein
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 239AMP
Genome assembly (visualization)
  • 171GRCh38
  • 127hg19
Lab
  • 239AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 2missing controlled_by
files.file_type!
  • bed broadPeak
BIOSAMPLE
ASSAY

239 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus23
brain17111
temporal lobe1511
substantia nigra151
angular gyrus15
primary cell
astrocyte of the cerebellum11
brain microvascular endothelial cell11
cerebellar granule cell2
choroid plexus epithelial cell11
Purkinje cell1
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