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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ChIP-seq
Assay category
89
DNA binding
Target of assay
89
histone
89
histone modification
47
narrow histone mark
42
broad histone mark
30
control
7
transcription factor
6
RNA binding protein
3
nucleotide modification
1
chromatin remodeller
0
other post-translational modification
Date released
21
September, 2018
19
October, 2019
14
August, 2017
14
December, 2017
10
November, 2019
3
August, 2021
3
May, 2019
2
June, 2019
2
May, 2021
1
March, 2020
Available data
93
bam
90
bigWig
88
bed narrowPeak
51
fastq
29
bigBed narrowPeak
bed broadPeak
4
bigBed broadPeak
4
tagAlign
3
bed bed3+
Organism
89
Homo sapiens
Biosample type
62
primary cell
15
in vitro differentiated cells
12
cell line
Organ
175
brain
139
pancreas
97
heart
90
liver
89
epithelium
77
connective tissue
67
blood vessel
67
vasculature
49
limb
31
adipose tissue
30
kidney
24
nerve
20
artery
20
musculature of body
13
vein
12
embryo
9
spleen
4
gonad
4
ovary
3
eye
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
87
AMP
2
T1D
Genome assembly (visualization)
86
GRCh38
86
hg19
Lab
89
AMP-T2D consortium
Audit category:
16
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
89 results
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Clear Filters
ChIP-seq
primary cell
endothelial cell of umbilical vein
13
pancreatic ductal cell
13
pancreatic acinar cell
8
epithelial cell of proximal tubule
7
pancreatic alpha cell
7
+ See 4 more…
in vitro differentiated cells
hepatocyte
12
Hepatic endoderm
2
pancreatic PP cell
1
cell line
EndoC_BH1
12
See all biosamples
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