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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 134ChIP-seq
  • 93single cell RNA-seq
  • 72total RNA-seq
  • 47ATAC-seq
  • 8WGBS
  • 3Hi-C
  • 3pCHi-C
  • 2RRBS
  • 1small RNA-seq
Assay category
  • 166Transcription
  • 134DNA binding
  • 47DNA accessibility
  • 10DNA methylation
  • 33D chromatin structure
Target of assay
  • 97histone
  • 97histone modification
  • 57broad histone mark
  • 40narrow histone mark
  • 20control
  • 17transcription factor
  • 11RNA binding protein
Date released
  • 92August, 2021
  • 66February, 2021
  • 57April, 2019
  • 40May, 2024
  • 36February, 2023
  • 25July, 2019
  • 21May, 2019
  • 8October, 2019
  • 7March, 2020
  • 5June, 2019
  • 3February, 2020
  • 3May, 2021
Available data
  • 224bigWig
  • 211bam
  • 191bed narrowPeak
  • 168tsv
  • 94bigBed narrowPeak
  • 30bed bed3+
  • bed broadPeak
  • 30bigBed broadPeak
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 6tagAlign
  • 3bedpe bed3+
  • 3hic
Organism
  • 363Homo sapiens
Biosample type
  • 286tissue
  • 66cell line
  • 10primary cell
  • 1in vitro differentiated cells
Organ
  • 925pancreas
  • 728liver
  • 674connective tissue
  • 502epithelium
  • 488adipose tissue
  • 363heart
  • 276kidney
  • 239brain
  • 219vasculature
  • 217blood vessel
  • 159bone element
  • 137artery
  • 86limb
  • 69blood
  • 69bodily fluid
  • 57eye
  • 50musculature of body
  • 41nerve
  • 37embryo
  • 24spleen
  • 20lung
  • 18vein
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 363AMP
Genome assembly (visualization)
  • 236GRCh38
  • 161hg19
Lab
  • 323AMP-T2D consortium
  • 40Patrick T. Ellinor, Broad
Audit category:
  • 5inconsistent ontology term
files.file_type!
  • bed broadPeak
BIOSAMPLE
ASSAY

363 results

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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle3518324111
left cardiac atrium4018
coronary artery5136
heart right ventricle13171211
right cardiac atrium61811
cell line
smooth muscle cell of the coronary artery6528
primary cell
cardiac fibroblast51
cardiac atrium fibroblast1
cardiac ventricle fibroblast1
endothelial cell of coronary artery1
smooth muscle cell of the coronary artery1
in vitro differentiated cells
cardiac fibroblast1
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