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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
9
ATAC-seq
7
total RNA-seq
4
Hi-C
3
WGBS
1
pCHi-C
Assay category
83
DNA binding
9
DNA accessibility
7
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
55
histone
55
histone modification
38
broad histone mark
25
control
17
narrow histone mark
6
transcription factor
3
other context
other post-translational modification
Date released
65
October, 2019
7
December, 2018
7
January, 2019
7
May, 2019
6
February, 2021
5
July, 2019
5
November, 2018
3
February, 2020
1
March, 2020
1
October, 2017
Available data
135
bam
104
bigWig
103
bed narrowPeak
94
bigBed narrowPeak
37
bed bed3+
bed broadPeak
37
bigBed broadPeak
21
fastq
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
107
Homo sapiens
Biosample type
107
tissue
Organ
925
pancreas
727
liver
674
connective tissue
502
epithelium
488
adipose tissue
heart
276
kidney
239
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
57
eye
50
musculature of body
41
nerve
37
embryo
21
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
107
AMP
Genome assembly (visualization)
72
GRCh38
70
hg19
Lab
107
AMP-T2D consortium
files.file_type!
bed broadPeak
organ_slims!
heart
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
107 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
1
5
tibial artery
23
1
1
spleen
17
1
2
1
muscle of leg
7
1
gastrocnemius medialis
1
4
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