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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
346
ChIP-seq
189
total RNA-seq
23
ATAC-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
346
DNA binding
193
Transcription
24
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
294
transcription factor
108
control
89
histone modification
88
histone
recombinant protein
RNA binding protein
54
narrow histone mark
34
broad histone mark
chromatin remodeller
1
other context
1
other post-translational modification
Date released
194
May, 2020
155
November, 2017
57
December, 2017
54
August, 2017
40
May, 2022
34
August, 2021
11
November, 2018
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
Available data
527
bam
470
bigWig
311
fastq
289
bed narrowPeak
207
bigBed narrowPeak
174
tsv
86
tagAlign
bed broadPeak
56
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
2
tar
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
580
Homo sapiens
Biosample type
354
tissue
201
cell line
13
in vitro differentiated cells
12
primary cell
Organ
916
pancreas
662
connective tissue
580
liver
496
epithelium
483
adipose tissue
352
heart
266
kidney
239
brain
216
vasculature
214
blood vessel
159
bone element
136
artery
86
limb
56
eye
54
blood
54
bodily fluid
50
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
580
AMP
Genome assembly (visualization)
421
hg19
342
GRCh38
Lab
510
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
25
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
6
missing controlled_by
Audit category:
3
inconsistent control read length
files.file_type!
bed broadPeak
target.investigated_as!
RNA binding protein
chromatin remodeller
recombinant protein
BIOSAMPLE
ASSAY
580 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
142
167
20
3
1
1
1
1
1
right lobe of liver
9
3
1
1
2
1
cell line
HepG2
178
14
1
1
2
2
2
1
in vitro differentiated cells
hepatocyte
13
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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