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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 26ChIP-seq
  • 6Hi-C
  • 6total RNA-seq
  • 5RRBS
  • 2small RNA-seq
  • 1ATAC-seq
  • 1WGBS
  • 1pCHi-C
  • 1single cell RNA-seq
  • 1snATAC-seq
Assay category
  • 26DNA binding
  • 9Transcription
  • 63D chromatin structure
  • 6DNA methylation
  • 2DNA accessibility
Target of assay
  • 20histone
  • 20histone modification
  • 12broad histone mark
  • 8narrow histone mark
  • 6control
Date released
  • 13August, 2017
  • 10July, 2019
  • 10June, 2019
  • 7May, 2019
  • 5March, 2020
  • 2February, 2020
  • 2May, 2022
  • 1January, 2018
Available data
  • 68bigWig
  • 60bed narrowPeak
  • 57bam
  • 47bigBed narrowPeak
  • bed broadPeak
  • 34bed bed3+
  • 33bigBed broadPeak
  • 15tagAlign
  • 9tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 2bedpe bed3+
  • 2fastq
  • 2hic
  • 1txt
Organism
  • 50Homo sapiens
Biosample type
  • 37tissue
  • 13primary cell
Organ
  • 925pancreas
  • 728liver
  • 674connective tissue
  • 502epithelium
  • 488adipose tissue
  • 363heart
  • 276kidney
  • 239brain
  • 219vasculature
  • 217blood vessel
  • 159bone element
  • 137artery
  • 86limb
  • 69blood
  • 69bodily fluid
  • 57eye
  • 50musculature of body
  • 41nerve
  • 37embryo
  • 24spleen
  • 20lung
  • 18vein
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 50AMP
Genome assembly (visualization)
  • 27hg19
  • 20GRCh38
Lab
  • 50AMP-T2D consortium
Audit category:
  • 8inconsistent ontology term
  • 1audit script error
files.file_type!
  • bed broadPeak
BIOSAMPLE
ASSAY

50 results

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Clear Filters
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue9141111
muscle of leg71
gastrocnemius medialis41
psoas muscle221
left ventricle myocardium1
primary cell
skeletal muscle satellite cell811
skeletal muscle cell21
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