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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 96ChIP-seq
  • 61total RNA-seq
  • 46ATAC-seq
  • 6single cell RNA-seq
  • 5Hi-C
  • 2WGBS
  • 1FAIRE-seq
  • 1RRBS
  • 1pCHi-C
Assay category
  • 96DNA binding
  • 67Transcription
  • 47DNA accessibility
  • 53D chromatin structure
  • 3DNA methylation
Target of assay
  • 67histone
  • 67histone modification
  • 43broad histone mark
  • 24narrow histone mark
  • 22control
  • 7transcription factor
  • 3RNA binding protein
Date released
  • 66February, 2021
  • 50May, 2019
  • 41October, 2019
  • 35February, 2023
  • 12July, 2019
  • 6August, 2021
  • 4March, 2020
  • 3February, 2020
  • 2November, 2017
Available data
  • 185bam
  • 155bigWig
  • 133bed narrowPeak
  • 83bigBed narrowPeak
  • 68tsv
  • bed broadPeak
  • 17bigBed broadPeak
  • 13bed bed3+
  • 6fastq
  • 6tagAlign
  • 3hic
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hdf5
  • 1tar
Organism
  • 219Homo sapiens
Biosample type
  • 128tissue
  • 66cell line
  • 25primary cell
Organ
  • 925pancreas
  • 728liver
  • 674connective tissue
  • 502epithelium
  • 488adipose tissue
  • 363heart
  • 276kidney
  • 239brain
  • 219vasculature
  • 217blood vessel
  • 159bone element
  • 137artery
  • 86limb
  • 69blood
  • 69bodily fluid
  • 57eye
  • 50musculature of body
  • 41nerve
  • 37embryo
  • 24spleen
  • 20lung
  • 18vein
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 219AMP
Genome assembly (visualization)
  • 176GRCh38
  • 149hg19
Lab
  • 219AMP-T2D consortium
Audit category:
  • 1audit script error
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  • bed broadPeak
BIOSAMPLE
ASSAY

219 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
RRBS
pCHi-C
tissue
coronary artery5136
tibial artery2311
aorta1314121
thoracic aorta1621
ascending aorta162
cell line
smooth muscle cell of the coronary artery6528
primary cell
endothelial cell of umbilical vein1521
brain microvascular endothelial cell11
choroid plexus epithelial cell11
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
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