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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 465ChIP-seq
Assay category
  • 465DNA binding
Target of assay
  • 952histone modification
  • 951histone
  • 485narrow histone mark
  • 465broad histone mark
  • 465transcription factor
  • 343control
  • 105RNA binding protein
  • 89recombinant protein
  • 31chromatin remodeller
  • 5nucleotide modification
  • 4other context
  • 4other post-translational modification
Date released
  • 197November, 2017
  • 64November, 2018
  • 45August, 2017
  • 42December, 2017
  • 28December, 2018
  • 16May, 2021
  • 15October, 2018
  • 14January, 2019
  • 11August, 2021
  • 7October, 2019
  • 6April, 2019
  • 5February, 2021
  • 5May, 2019
  • 5May, 2024
  • 4June, 2019
  • 1November, 2019
Available data
  • 496bigWig
  • 485bam
  • 469bed narrowPeak
  • 454fastq
  • 405bigBed narrowPeak
  • bed broadPeak
  • 49bigBed broadPeak
  • 19bed bed3+
  • 9tagAlign
  • 3tar
Organism
  • 465Homo sapiens
Biosample type
  • 317cell line
  • 94tissue
  • 49in vitro differentiated cells
  • 5primary cell
Organ
  • 294liver
  • 51blood
  • 51bodily fluid
  • 40connective tissue
  • 19pancreas
  • 17adipose tissue
  • 17heart
  • 10kidney
  • 7blood vessel
  • 7epithelium
  • 7vasculature
  • 6spleen
  • 5artery
  • 3embryo
  • 1eye
Project
  • 465AMP
Genome assembly (visualization)
  • 438hg19
  • 412GRCh38
Lab
  • 437AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 11Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 28inconsistent control
  • 14inconsistent ontology term
Audit category:
  • 35missing controlled_by
Audit category:
  • 23inconsistent control read length
  • 8inconsistent control run_type
files.file_type!
  • bed broadPeak
BIOSAMPLE
ASSAY

465 results

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Clear Filters
ChIP-seq
cell line
HepG2253
GM1287851
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
tissue
liver37
white adipose tissue12
body of pancreas9
islet of Langerhans7
spleen6
in vitro differentiated cells
adipocyte22
embryonic stem cell12
cardiomyocytes3
pancreatic endoderm3
Posterior foregut2
primary cell
cardiac fibroblast1
cardiac muscle cell1
epithelial cell of proximal tubule1
kidney epithelial cell1
retinal pigment epithelial cell1
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