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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
92
ChIP-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
193
Transcription
92
DNA binding
7
DNA methylation
4
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
80
control
9
transcription factor
3
histone
3
histone modification
2
RNA binding protein
2
narrow histone mark
1
broad histone mark
1
recombinant protein
Date released
144
May, 2020
63
November, 2017
20
May, 2022
17
August, 2021
16
August, 2017
13
December, 2017
10
July, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
2
November, 2018
1
December, 2018
1
February, 2020
1
October, 2019
Available data
681
bam
622
bigWig
465
fastq
bed narrowPeak
358
bigBed narrowPeak
174
tsv
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
303
Homo sapiens
Biosample type
205
tissue
90
cell line
7
primary cell
1
in vitro differentiated cells
Organ
727
pancreas
588
connective tissue
471
adipose tissue
371
epithelium
303
liver
200
heart
171
kidney
151
bone element
101
vasculature
99
blood vessel
65
artery
48
brain
34
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
303
AMP
Genome assembly (visualization)
185
hg19
164
GRCh38
Lab
266
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
missing controlled_by
files.file_type!
bed narrowPeak
tagAlign
organ_slims!
lymph node
BIOSAMPLE
ASSAY
303 results
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Clear Filters
total RNA-seq
ChIP-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
20
3
1
1
1
1
1
right lobe of liver
3
3
1
2
1
cell line
HepG2
14
68
1
2
2
2
1
primary cell
hepatocyte
5
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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