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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
6
Hi-C
6
total RNA-seq
2
RRBS
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
12
DNA binding
9
Transcription
6
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
11
August, 2017
8
July, 2019
5
March, 2020
2
February, 2020
2
June, 2019
2
May, 2022
1
January, 2018
1
May, 2019
Available data
68
bigWig
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
32
Homo sapiens
Biosample type
28
tissue
4
primary cell
Organ
726
pancreas
606
connective tissue
476
adipose tissue
361
epithelium
342
liver
194
heart
164
kidney
151
bone element
101
vasculature
100
blood vessel
81
brain
artery
32
musculature of body
29
limb
27
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
9
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
32
AMP
Genome assembly (visualization)
10
hg19
6
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bed narrowPeak
bigBed bedMethyl
month_released!
December, 2019
organ_slims!
artery
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
1
2
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
muscle of leg
1
primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
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