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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
RRBS
1
WGBS
1
pCHi-C
Assay category
23
DNA binding
9
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
11
May, 2019
11
October, 2019
6
August, 2021
3
February, 2020
3
March, 2020
2
February, 2021
2
July, 2019
Available data
185
bam
bigWig
bed narrowPeak
83
bigBed narrowPeak
68
tsv
17
bed broadPeak
17
bigBed broadPeak
12
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
1
hdf5
1
tar
Organism
38
Homo sapiens
Biosample type
28
tissue
8
primary cell
2
cell line
Organ
285
pancreas
209
epithelium
liver
126
heart
111
connective tissue
93
bone element
81
kidney
64
adipose tissue
63
brain
38
vasculature
37
blood vessel
28
eye
28
musculature of body
25
limb
20
lung
14
blood
14
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
38
AMP
Genome assembly (visualization)
4
hg19
Lab
38
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed narrowPeak
bigWig
lab.title!
Katalin Susztak, Upenn
organ_slims!
liver
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
RRBS
WGBS
pCHi-C
tissue
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
5
2
choroid plexus epithelial cell
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
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