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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
6
WGBS
4
ATAC-seq
3
ChIP-seq
3
snDrop-seq
2
pCHi-C
Assay category
31
DNA accessibility
18
Transcription
6
DNA methylation
3
DNA binding
Target of assay
3
control
Date released
198
August, 2021
162
May, 2022
147
February, 2021
139
August, 2017
139
February, 2023
103
October, 2019
83
May, 2021
81
May, 2020
71
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
29
October, 2018
24
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
10
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
November, 2019
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
572
bam
559
tsv
bigWig
89
txt
45
fastq
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
147
Homo sapiens
Biosample type
93
tissue
46
primary cell
4
cell line
4
in vitro differentiated cells
Organ
84
bone element
8
kidney
6
epithelium
6
pancreas
5
connective tissue
2
artery
2
blood vessel
2
heart
2
liver
2
vasculature
Project
102
AMP
45
HPAP
Genome assembly (visualization)
6
hg19
Lab
102
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
files.file_type!
bed narrowPeak
bigWig
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
147 results
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Clear Filters
RNA microarray
snATAC-seq
single cell RNA-seq
WGBS
ATAC-seq
ChIP-seq
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
5
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 1 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
cell line
smooth muscle cell of the coronary artery
2
HepG2
1
iPSC derived cell line
1
in vitro differentiated cells
adipocyte
4
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