Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
6
single cell RNA-seq
4
total RNA-seq
3
Hi-C
2
pCHi-C
1
WGBS
Assay category
34
DNA binding
10
Transcription
3
3D chromatin structure
1
DNA methylation
Target of assay
31
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
22
October, 2019
11
May, 2019
6
August, 2021
4
February, 2020
4
March, 2020
2
February, 2021
1
July, 2019
Available data
222
bam
bigWig
bed narrowPeak
105
bigBed narrowPeak
74
tsv
15
bed broadPeak
15
bigBed broadPeak
13
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
50
Homo sapiens
Biosample type
41
tissue
7
primary cell
2
cell line
Organ
285
pancreas
209
epithelium
167
liver
159
kidney
126
heart
111
connective tissue
93
bone element
64
adipose tissue
63
brain
38
vasculature
37
blood vessel
28
eye
28
musculature of body
25
limb
20
lung
14
blood
14
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
50
AMP
Genome assembly (visualization)
3
hg19
Lab
50
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bed narrowPeak
bigWig
BIOSAMPLE
ASSAY
50 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
pCHi-C
WGBS
tissue
tibial nerve
11
1
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
+ See 3 more…
primary cell
endothelial cell of umbilical vein
5
2
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
Download