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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
total RNA-seq
35
ChIP-seq
3
WGBS
3
small RNA-seq
2
ATAC-seq
1
RNA microarray
1
RRBS
1
pCHi-C
Assay category
402
Transcription
35
DNA binding
4
DNA methylation
2
DNA accessibility
Target of assay
30
histone
30
histone modification
20
broad histone mark
10
narrow histone mark
5
control
Date released
386
February, 2021
38
August, 2017
14
July, 2019
2
February, 2020
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2023
1
October, 2019
Available data
443
bam
426
bigWig
402
tsv
fastq
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed bedMethyl
3
bed broadPeak
3
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
444
Homo sapiens
Biosample type
442
tissue
3
primary cell
Organ
560
connective tissue
443
adipose tissue
406
pancreas
253
liver
202
heart
193
epithelium
171
kidney
151
bone element
101
vasculature
100
blood vessel
76
brain
67
artery
34
musculature of body
30
limb
28
eye
20
lung
16
nerve
10
embryo
9
blood
9
bodily fluid
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
445
AMP
Genome assembly (visualization)
403
hg19
400
GRCh38
Lab
445
AMP-T2D consortium
files.file_type!
bed narrowPeak
fastq
organ_slims!
small intestine
BIOSAMPLE
ASSAY
445 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
ATAC-seq
RNA microarray
RRBS
pCHi-C
tissue
adipose tissue
382
2
1
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
7
1
1
omental fat pad
5
1
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
pericardium fibroblast
1
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