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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 35ChIP-seq
  • 9total RNA-seq
  • 4RRBS
Assay category
  • 35DNA binding
  • 9Transcription
  • 4DNA methylation
Target of assay
  • 29control
  • 4histone
  • 4histone modification
  • 2broad histone mark
  • 2narrow histone mark
  • 2transcription factor
  • 1RNA binding protein
Date released
  • 20August, 2017
  • 17February, 2018
  • 8November, 2017
  • 1December, 2017
  • 1January, 2019
  • 1October, 2017
Available data
  • 142fastq
  • 137bam
  • 113bigWig
  • bed narrowPeak
  • 64bigBed narrowPeak
  • 53bed broadPeak
  • 53bigBed broadPeak
  • 16tagAlign
  • 9tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed bed3+
Organism
  • 48Homo sapiens
Biosample type
  • 17in vitro differentiated cells
  • 14primary cell
  • 9cell line
  • 8tissue
Organ
  • 15pancreas
  • 12epithelium
  • 10liver
  • 6embryo
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1brain
Project
  • 48AMP
Genome assembly (visualization)
  • 23hg19
  • 12GRCh38
Lab
  • 48AMP-T2D consortium
Audit category:
  • 3missing controlled_by
Audit category:
  • 2inconsistent control read length
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

48 results

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Clear Filters
ChIP-seq
total RNA-seq
RRBS
in vitro differentiated cells
pancreatic endoderm33
endocrine cell12
definitive endodermal cell11
embryonic stem cell11
posterior foregut11
primary cell
pancreatic alpha cell6
pancreatic beta cell6
skeletal muscle myoblast11
cell line
HepG28
GM128781
tissue
islet of Langerhans3
liver11
skeletal muscle tissue2
brain1
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